PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2622s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 430aa    MW: 49524.6 Da    PI: 5.9689
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2622s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-09731126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ykt+lC  f +tG C++ ++C+FaHg
  Cagra.2622s0030.1.p  7 YKTKLCILFKKTGNCSR-PNCSFAHG 31
                         9****************.*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.4E-6436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-12438IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.436633IPR000571Zinc finger, CCCH-type
SMARTSM003560.0045632IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-7731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSGSSMYKTK LCILFKKTGN CSRPNCSFAH GTAELRRPGE SSFPGRRYNM DCDLRDRLGR  60
QFSPERRPSL DRSGRRLQRF NGHENARPFD NRREKDFREN HRFDERRDYA GGLKVGNRIE  120
DRAEDGRNKF QGYNNVLEEQ LKDVEMDVKM LTDDKLRLEA SVERKAQEVD ILTSRMQELE  180
NQLDREKEEC RRITSSTKKF VKEYNRFLRA QDDLKRSEAR LQKLGNQLST YLAGSEGKNR  240
DGNVDIVSDE ENNGRNLSIA CDPQNELQNT SSMSRKKRYV DQYTTKETVE DGFIGRGEQE  300
KMEKEKEKKR PSRWNTVSSK SYSEEESGAW NDEDTINKSS SKEDNWKRRR YSIGTSSTDK  360
VISSTSMAAR VFDDVAEFEE EIPEAAKSSP LISLPPPPPL RDTHVQGEEA DVNVDVMEQG  420
KANDLDDSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0598990.0AY059899.1 Arabidopsis thaliana Unknown protein (At3g21810; MSD21.12) mRNA, complete cds.
GenBankAY1287910.0AY128791.1 Arabidopsis thaliana unknown protein (At3g21810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299351.10.0hypothetical protein CARUB_v10015508mg
SwissprotQ93XW70.0C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLR0HR330.0R0HR33_9BRAS; Uncharacterized protein
STRINGscaffold_302603.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.10.0C3H family protein